40.Berner D (2021) Matters Arising: Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin. Nature Communications, in press
39.Laurentino TG, Moser D, Roesti M, Ammann M, Frey A, Ronco F, Kueng B, Berner D (2020) Genomic release-recapture experiment in the wild reveals within-generation polygenic selection in stickleback fish. Nature Communications, 11: 1928

Bissegger M, Laurentino TG, Roesti M, Berner D (2020) Widespread intersex differentiation across the stickleback genome – the signature of sexually antagonistic selection? Molecular Ecology, 29: 262-271

37.Berner D, Roesti M, Bilobram S, Chan SK, Kirk H, Pandoh P, Taylor GA, Zhao Y, Jones SJM, DeFaveri J (2019) De novo sequencing, assembly, and annotation of four threespine stickleback genomes based on microfluidic partitioned DNA libraries. Genes, 10: 426
36.Berner D (2019) Allele frequency difference AFD - an intuitive alternative to FST for quantifying genetic population differentiation. Genes, 10: 308
35.Dukic M, Berner D, Haag CR, Ebert D (2019) How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna. Journal of Evolutionary Biology, 32: 619-628
34.Haenel Q, Roesti M, Moser D, MacColl A, Berner D (2019) Predictable genome-wide sorting of standing genetic variation during parallel adaptation to basic versus acidic environments in stickleback fish. Evolution Letters, 3: 28-42
33.Haenel Q, Laurentino TG, Roesti M, Berner D (2018) Meta-analysis of chromosome-scale crossover rate variation in eukaryotes and its significance to evolutionary genomics. Molecular Ecology, 27: 2477-2497
32.Berner D, Roesti M (2017) Genomics of adaptive divergence with chromosome-scale heterogeneity in crossover rate. Molecular Ecology, 26: 6351-6369
31.Lohman BK, Berner D, Bolnick DI (2017) Clines arc through multivariate morphospace. American Naturalist, 189: 345-367
30. Berner D, Ammann M, Spencer E, Rüegg A, Lüscher D, Moser D (2017) Sexual isolation promotes divergence between parapatric lake and stream stickleback. Journal of Evolutionary Biology, 30: 401-411
29.Dukic M, Berner D, Roesti M, Haag CR, Ebert D (2016) A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna. BMC Genetics, 17:137
28.Moser D, Frey A, Berner D (2016) Fitness differences between parapatric lake and stream stickleback revealed by a field transplant. Journal of Evolutionary Biology, 29: 711-719
27.Roesti M, Kueng B, Moser D, Berner D (2015) The genomics of ecological vicariance in threespine stickleback fish. Nature Communications, 6: 8767
26.Berner D, Salzburger W (2015) The genomics of organismal diversification illuminated by adaptive radiations. Trends in Genetics, 31: 491-499
25.Berner D, Thibert-Plante X (2015) How mechanisms of habitat preference evolve and promote divergence with gene flow. Journal of Evolutionary Biology, 28: 1641-1655
24.Moser D, Kueng B, Berner D (2015) Lake-stream divergence in stickleback life history: a plastic response to trophic niche differentiation? Evolutionary Biology, 42: 328-338

Roesti M, Gavrilets S, Hendry AP, Salzburger W, Berner D (2014) The genomic signature of parallel adaptation from shared genetic variation. Molecular Ecology, 23: 3944-3956


Berner D, Moser D, Roesti M, Buescher H, Salzburger W (2014) Genetic architecture of skeletal evolution in European lake and stream stickleback. Evolution, 68: 1792-1805


Mateus CS, Stange M, Berner D, Roesti M, Quintella BR, Alves MJ, Almeida PR, Salzburger W (2013) Strong genome-wide divergence between sympatric European river and brook lampreys. Current Biology, 23: R649-R650


Roesti M, Moser D, Berner D (2013) Recombination in the threespine stickleback genome - patterns and consequences. Molecular Ecology, 22: 3014-3027


Moser D, Roesti M, Berner D (2012) Repeated lake-stream divergence in stickleback life history within a Central European lake basin. PLoS ONE, 7: e50620


Berner D (2012) How much can the orientation of G's eigenvectors tell us about genetic constraints? Ecology and Evolution, 2: 1834-1842


Roesti M, Salzburger W, Berner D (2012) Uninformative polymorphisms bias genome scans for signatures of selection. BMC Evolutionary Biology, 12: 94


Roesti M, Hendry AP, Salzburger W, Berner D (2012) Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs. Molecular Ecology, 21: 2852-2862


Berner D, Kaeuffer R, Grandchamp A-C, Raeymaekers JAM, Räsänen K, Hendry AP (2011) Quantitative genetic inheritance of morphological divergence in a lake-stream stickleback ecotype pair: implications for reproductive isolation. Journal of Evolutionary Biology 24:1975-1983


Berner D (2011) Size correction in biology: how reliable are approaches based on (common) principal component analysis? Oecologia 166:961-971


Raeymaekers JAM, Boisjoly M, Delaire L, Berner D, Räsänen K, Hendry AP (2010) Testing for mating isolation between ecotypes: laboratory experiments with lake, stream, and hybrid stickleback. Journal of Evolutionary Biology 23: 2694-2708


Berner D, Roesti M, Hendry AP, Salzburger W (2010) Constraints on speciation suggested by comparing lake-stream stickleback divergence across two continents. Molecular Ecology 19: 4963-4978


Berner D, Stutz W, Bolnick DI. (2010) Foraging trait (co)variances in stickleback evolve deterministically and do not predict trajectories of adaptive diversification. Evolution 64: 2265-2277


Crispo E, DiBattista JD, Correa C, Thibert-Plante X, McKellar AE, Schwartz AK, Berner D, De León LF, Hendry AP (2010) The evolution of phenotypic plasticity in response to anthropogenic disturbance. Evolutionary Ecology Research 12: 47-66


Berner D (2009) Correction of a bootstrap approach to testing for evolution along lines of least resistance. Journal of Evolutionary Biology 22: 2563-2565


Hendry AP, Bolnick DI, Berner D, Peichel CL (2009) Along the speciation continuum in sticklebacks. Journal of Fish Biology 75: 2000-2036


Berner D, Grandchamp A-C, Hendry AP (2009) Variable progress toward ecological speciation in parapatry: stickleback across eight lake-stream transitions. Evolution, 63: 1740-1753


Sharpe DMT, Räsänen K, Berner D, Hendry AP (2008) Genetic and environmental contributions to the morphology of lake and stream stickleback: implications for gene flow and reproductive isolation. Evolutionary Ecology Research 10: 849-866


Berner D, Adams DC, Grandchamp A-C, Hendry AP (2008) Natural selection drives patterns of lake-stream divergence in stickleback foraging morphology. Journal of Evolutionary Biology 21:1653-1665


Berner D & Blanckenhorn WU (2007) An ontogenetic perspective on the relationship between age and size at maturity. Functional Ecology 21: 505-512 .pdf


Berner D & Blanckenhorn WU (2006) Grasshopper ontogeny in relation to time constraints: adaptive divergence and stasis. Journal of Animal Ecology 75: 130-139 .pdf


Berner D, Blanckenhorn WU, Körner Ch (2005) Grasshoppers cope with low host plant quality by compensatory feeding and food selection: N limitation challenged. Oikos 111: 525-533 .pdf


Berner D, Körner Ch, Blanckenhorn WU (2004) Grasshopper populations across 2000 m of altitude: is there life history adaptation? Ecography 27: 733-740 .pdf